269328 (PCB1) COG4799
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269328 chr_8 (PCB1) COG4799 142266 144031 + COG4799

Synonyms

NCBI ID Ensembl Genomes exon ID
7443455 Thaps269328.1, Thaps269328.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0405

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0126
 0.34

Most Highly Correlated Transcripts

3260

hypothetical protein
0.8922

263480

COG4770
0.8904

34191

CobN_like
0.8828

20854

hypothetical protein
0.8807

1275

hypothetical protein
0.8698

38046

MdlB
0.8642

25087

hypothetical protein
0.8626

3456

Peptidase_S41_CPP
0.8608

32789

(PCC1) COG4799
0.8456

268335

ELFV_dehydrog
0.8454

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] - 608.059 0 1 - 498 multi-dom 227136

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_19329 PHATRDRAFT_19329 Not available 288622 455777 Cre03.g181200.t1.2 AT4G34030.1 565421

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0016874 GO:0004485 -

GO:0016874

ligase activity

Details: 
Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0004485

methylcrotonoyl-CoA carboxylase activity

Details: 
Catalysis of the reaction: 3-methylbut-2-enoyl-CoA + ATP + bicarbonate = trans-3-methylglutaconyl-CoA + ADP + 2 H(+) + phosphate.
GO Category: 
MF

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