32789 (PCC1) COG4799
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32789 chr_3 (PCC1) COG4799 2248558 2250800 - COG4799

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0144

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0161
 0.36

Most Highly Correlated Transcripts

269513

PTZ00461
0.9124

15819

Arginase_HDAC superfamily
0.8937

263480

COG4770
0.8918

19435

PTZ00184
0.8912

4909

hypothetical protein
0.8886

32139

hypothetical protein
0.8829

42646

PRK04342
0.8814

12021

hypothetical protein
0.8772

bd410

(bd410) HNHc
0.8747

10860

Methyltransf_21
0.8734

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRK07189 superfamily malonate decarboxylase subunit beta; Reviewed - 73.3982 1.55E-14 165 - 333 superfamily 248236
ACCA superfamily Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit; Acetyl co-enzyme A carboxylase... - 64.8279 1.30E-11 411 - 539 superfamily 267525
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] - 698.966 0 140 - 639 multi-dom 227136

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45886 PHATRDRAFT_45886 167310 284422 428897 Not available Not available 353994

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0016874 GO:0003989 GO:0006633 GO:0009317 GO:0004658 -

GO:0016874

ligase activity

Details: 
Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0003989

acetyl-CoA carboxylase activity

Details: 
Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA.
GO Category: 
MF

GO:0006633

fatty acid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
GO Category: 
BP

GO:0009317

acetyl-CoA carboxylase complex

Details: 
A protein complex that catalyzes the first step in long-chain fatty acid biosynthesis. For example, in E. coli the complex is heterohexameric and composed of biotin carbonyl carrier protein, biotin carboxylase and the acetate CoA-transferase complex.
GO Category: 
CC

GO:0004658

propionyl-CoA carboxylase activity

Details: 
Catalysis of the reaction: ATP + propanoyl-CoA + HCO3- = ADP + phosphate + (S)-methylmalonyl-CoA.
GO Category: 
MF

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