269352 WD40 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
269352 chr_8 WD40 superfamily 584426 586021 - WD40 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7450168 Thaps269352.2, Thaps269352.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0271

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0199
 0.24

Most Highly Correlated Transcripts

268598

COG1094
0.9209

34027

SrmB
0.9207

25663

hypothetical protein
0.9157

38006

FKBP_C
0.911

32395

RNA_pol
0.9052

34413

RRM_ABT1_like
0.903

33252

SrmB
0.9014

42282

HA2
0.9006

bd1807

(bd1807) RRS1 superfamily
0.8989

29705

18S_RNA_Rcl1p
0.8985

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 125.525 7.63E-33 65 - 308 superfamily 238121
Sof1 superfamily Sof1-like domain; Sof1 is essential for cell growth and is a component of the nucleolar rRNA... - 111.986 3.76E-30 365 - 452 superfamily 252419
COG2319 FOG: WD40 repeat [General function prediction only] - 114.415 4.94E-28 65 - 375 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_44047 PHATR_44047 197135 241914 63613 Cre07.g318702.t1.1 AT4G28450.1 314636

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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