270030 HECTc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
270030 chr_20 HECTc 351023 352474 - HECTc

Synonyms

NCBI ID Ensembl Genomes exon ID
7443361 Thaps270030.2, Thaps270030.1, Thaps270030.4, Thaps270030.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0411

Most Highly Correlated Transcripts

270222

0.9489

7261

hypothetical protein
0.907

12836

EEP superfamily
0.9066

4862

Bromodomain superfamily
0.9002

25451

AAA superfamily
0.8971

1216

hypothetical protein
0.8944

22618

SF1_like-KH
0.8922

8979

hypothetical protein
0.8901

25619

hypothetical protein
0.8891

23207

hypothetical protein
0.886

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds... cl00077 350.712 6.47E-118 54 - 424 specific 238033
HECTc superfamily HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds... - 350.712 6.47E-118 54 - 424 superfamily 260176
HECTc Domain Homologous to E6-AP Carboxyl Terminus with; E3 ubiquitin-protein ligases. Can bind to E2... - 317.253 4.16E-105 78 - 423 multi-dom 214523

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14843 PHATRDRAFT_14843 188538 189943 Not available Cre06.g280300.t1.1 Not available 498916

KEGG

KEGG description KEGG Pathway
Ubiquitin mediated proteolysis map04120

GO Terms

GO:0004842 GO:0005622 GO:0006464 GO:0006512 -

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0006464

cellular protein modification process

Details: 
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
GO Category: 
BP

GO:0006512

NA

Details: 
NA
GO Category: 
NA

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