27167 (RL7) Ribosomal_L7_archeal_euk
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
27167 chr_2 (RL7) Ribosomal_L7_archeal_euk 1645849 1646721 - Ribosomal_L7_archeal_euk
NCBI ID Ensembl Genomes exon ID
7443092 Thaps27167.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0047
Normalized Mean Residue
Thaps_bicluster_0227
0.33
(RL6) KOW_RPL6
0.9369
PTZ00084
0.9272
(RL13e) Ribosomal_L13e superfamily
0.9203
(RL13A) Ribosomal_L13
0.897
Ribosomal_L7Ae superfamily
0.8928
(RL18) Ribosomal_L18e superfamily
0.8911
(RL27A) Ribosomal_L18e superfamily
0.8865
(RS6) Ribosomal_S6e superfamily
0.8765
(RS7) Ribosomal_S7e
0.8732
(bd1221) recQ_fam
0.8726
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ribosomal_L7_archeal_euk Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain... cl00203 228.565 1.40E-75 92 - 241 specific 100099
Ribosomal_L30_like superfamily Ribosomal protein L30, which is found in eukaryotes and prokaryotes but not in archaea, is one of... - 228.565 1.40E-75 92 - 241 superfamily 260257
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22774 PHATRDRAFT_22774 272633 66355 446099 Cre12.g537800.t1.2 AT2G01250.1 285152
KEGG description KEGG Pathway
Ribosome map03010
GO:0004197 GO:0006508 GO:0003735 GO:0005622 GO:0005840 GO:0006412 GO:0015934 GO:0030528 -

cysteine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
GO Category: 
MF

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

large ribosomal subunit

Details: 
The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).
GO Category: 
CC

NA

Details: 
NA
GO Category: 
NA
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