28710 Ufd2P_core superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
28710	chr_6	Ufd2P_core superfamily	1329278	1330900	-	Ufd2P_core superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442716	Thaps28710.2, Thaps28710.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0177

Most Highly Correlated Transcripts

6121 hypothetical protein 0.895	21420 hypothetical protein 0.89	9187 hypothetical protein 0.882	24525 hypothetical protein 0.879	bd789 (bd789) ABC_ATPase superfamily 0.8754	268338 (FAO1) fadB 0.868
8500 PRP38 superfamily 0.8654	23728 WD40 superfamily 0.8603	bd176 (bd176) PP2Cc 0.8592	2593 ANK 0.8577

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Ufd2P_core superfamily		Ubiquitin elongating factor core; This is the most conserved part of the core region of Ufd2P...	-	221.369	1.48E-64	6 - 386	superfamily	255966
U-box superfamily		U-box domain; This domain is related to the Ring finger pfam00097 but lacks the zinc binding...	-	93.5296	2.26E-23	401 - 473	superfamily	266741

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_12538	PHATRDRAFT_12538	182511	318386	447692	Cre09.g398350.t1.2	AT5G15400.1	476181

KEGG

KEGG description	KEGG Pathway
Protein processing in endoplasmic reticulum	map04141

GO Terms

GO:0000151 GO:0004842 GO:0016567 -

Add comment

Log in to post comments