3078 vWFA superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3078 chr_3 vWFA superfamily 44766 50848 + vWFA superfamily

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0455

Most Highly Correlated Transcripts

12836

EEP superfamily
0.881

263610

COG3899
0.8756

24063

COG3899
0.874

20792

hypothetical protein
0.865

4672

hypothetical protein
0.8621

24331

(Tp_TAZ5_PHD3_ZZ3) KAT11 superfamily
0.8597

24098

hypothetical protein
0.8565

22112

Vps54 superfamily
0.8559

24489

TPR_12
0.8559

263599

COG3899
0.8551

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
vWFA superfamily Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von... - 163.854 4.27E-45 1583 - 1761 superfamily 260163
AAA_5 AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not... cl18944 107.768 2.28E-26 591 - 737 specific 254388
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 90.8194 1.37E-20 1141 - 1277 superfamily 267297
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 90.8194 1.37E-20 1141 - 1277 superfamily 267297
Zip superfamily ZIP Zinc transporter; The ZIP family consists of zinc transport proteins and many putative metal... - 90.8723 1.36E-19 133 - 510 superfamily 260422

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50058 PHATRDRAFT_50058 169419 238520 470648 Not available Not available 308938

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016020 GO:0030001 GO:0046873 -

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0030001

metal ion transport

Details: 
The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0046873

metal ion transmembrane transporter activity

Details: 
Catalysis of the transfer of metal ions from one side of a membrane to the other.
GO Category: 
MF

Add comment

Log in to post comments