30862 PTZ00368Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
30862	chr_1	PTZ00368	1869381	1870106	-	PTZ00368

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446807	Thaps30862.2, Thaps30862.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0223

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0284	0.26	0.16 0.049

Most Highly Correlated Transcripts

bd1807 (bd1807) RRS1 superfamily 0.9285	269559 hypothetical protein 0.9259	268136 COG1054 0.9168	5053 hypothetical protein 0.9147	270004 hypothetical protein 0.903	268443 SAICAR_synt_Sc 0.9004
3919 Nop25 0.8999	21973 G-patch 0.8957	263046 HA 0.8947	268027 Met_10 0.8942

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PTZ00368		universal minicircle sequence binding protein (UMSBP); Provisional	-	59.4352	8.29E-12	65 - 171	multi-dom	173561

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_16155	PHATRDRAFT_16155	163747	161489	Not available	Not available	AT5G52380.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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