268027 Met_10Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
268027	chr_1	Met_10	1510020	1511871	-	Met_10

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445125	Thaps268027.2, Thaps268027.1, Thaps268027.3, Thaps268027.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0223

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0284	0.26	0.16 0.049

Most Highly Correlated Transcripts

5484 DUF914 0.9346	19623 RRM3_MEI2_like 0.9333	23812 TrmA 0.9275	5053 hypothetical protein 0.9268	268136 COG1054 0.9199	23242 PRK00142 0.9195
269559 hypothetical protein 0.9189	2392 hypothetical protein 0.9162	26022 Pam16 superfamily 0.9159	4372 hypothetical protein 0.9155

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Met_10		Met-10+ like-protein; The methionine-10 mutant allele of N. crassa codes for a protein of unknown...	-	187.918	2.36E-56	153 - 358	multi-dom	251319

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44373	PHATRDRAFT_44373	192558	162558	Not available	Cre16.g672041.t1.1	AT4G27340.1	561839

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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