30977 (PDF1) Pep_deformylase
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30977 chr_1 (PDF1) Pep_deformylase 2725073 2725892 - Pep_deformylase

Synonyms

NCBI ID Ensembl Genomes exon ID
7445693 Thaps30977.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0458

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0027
 0.38

Most Highly Correlated Transcripts

262977

NA
0.9167

25040

NA
0.8932

6028

NA
0.8904

23291

hypothetical protein
0.8847

bd1318

(bd1318) atpF
0.8825

21647

hypothetical protein
0.8816

bd718

(bd718) PRK10387
0.8812

bd1306

(bd1306) NA
0.8791

21489

Y_phosphatase3
0.8775

37118

FeThRed_B
0.8756

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Pep_deformylase Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-... cl00234 175.367 1.17E-54 97 - 243 specific 238271
Pep_deformylase superfamily Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-... - 175.367 1.17E-54 97 - 243 superfamily 260286

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
34996 Not available 190746 320390 46715 Cre01.g039750.t1.2 AT5G14660.2 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005506 GO:0006412 GO:0042586 GO:0008463 -

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0042586

peptide deformylase activity

Details: 
Catalysis of the reaction: formyl-L-methionyl peptide + H2O = formate + methionyl peptide.
GO Category: 
MF

GO:0008463

formylmethionine deformylase activity

Details: 
Catalysis of the reaction: N-formyl-L-methionine + H(2)O = L-methionine + formate.
GO Category: 
MF

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