31121 RRM_PPIE
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31121 chr_1 RRM_PPIE 2142812 2143234 + RRM_PPIE

Synonyms

NCBI ID Ensembl Genomes exon ID
7447610 Thaps31121.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0207

Most Highly Correlated Transcripts

261982

(ACB1) ACBP
0.924

30701

PRK05279
0.9239

18462

EMP24_GP25L
0.9166

25068

hypothetical protein
0.9109

bd1777

(bd1777) NA
0.9075

5074

hypothetical protein
0.9056

39497

Sar1
0.9049

3454

hypothetical protein
0.9024

262977

NA
0.9005

269624

TIM_phosphate_binding superfamily
0.9001

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_PPIE RNA recognition motif in cyclophilin-33 (Cyp33) and similar proteins; This subfamily corresponds to... cl17169 120.02 9.21E-36 13 - 85 specific 240793
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 120.02 9.21E-36 13 - 85 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11308 PHATRDRAFT_11308 271703 304740 458033 Cre06.g288750.t1.2 AT1G13690.1 470319

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0003755 GO:0004600 GO:0030051 GO:0042027 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

Details: 
Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0).
GO Category: 
MF

GO:0004600

NA

Details: 
NA
GO Category: 
NA

GO:0030051

NA

Details: 
NA
GO Category: 
NA

GO:0042027

NA

Details: 
NA
GO Category: 
NA

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