31256 TGT superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31256 chr_1 TGT superfamily 961204 962848 - TGT superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7445296 Thaps31256.1, Thaps31256.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0238

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0119
 0.42

Most Highly Correlated Transcripts

37705

DUF4110
0.9258

269034

hypothetical protein
0.9156

6711

hypothetical protein
0.9111

4372

hypothetical protein
0.9047

268443

SAICAR_synt_Sc
0.9009

268859

(GGTB1) PLN03201
0.8995

2332

PTZ00340
0.8983

5387

hypothetical protein
0.8866

20930

DRE_TIM_metallolyase superfamily
0.8853

21698

hypothetical protein
0.8847

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TGT superfamily Queuine tRNA-ribosyltransferase; This is a family of queuine tRNA-ribosyltransferases EC:2.4.2.29,... - 413.73 3.76E-141 95 - 476 superfamily 267577
Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis] - 383.921 2.01E-129 99 - 486 multi-dom 223420

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_17628 PHATRDRAFT_17628 274254 195568 Not available Cre12.g558400.t1.1 Not available 355889

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006400 GO:0008479 GO:0008616 -

GO:0006400

tRNA modification

Details: 
The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically.
GO Category: 
BP

GO:0008479

queuine tRNA-ribosyltransferase activity

Details: 
Catalysis of the reaction: tRNA guanine + queuine = tRNA queuine + guanine.
GO Category: 
MF

GO:0008616

queuosine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents.
GO Category: 
BP

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