31375 DcpS_CThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
31375	chr_1	DcpS_C	1829241	1829867	-	DcpS_C

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443121	Thaps31375.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0293

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0119	0.42	8.5 8.5

Most Highly Correlated Transcripts

9806 hypothetical protein 0.7748	bd1069 (bd1069) NA 0.7694	992 hypothetical protein 0.7577	586 PTZ00018 0.7525	38757 trmE 0.7484	9384 hypothetical protein 0.739
24990 hypothetical protein 0.7376	bd1455 (bd1455) FtsH_fam 0.7326	19360 HELICc 0.7283	bd1474 (bd1474) phytoene_desat 0.7282

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DcpS_C		Scavenger mRNA decapping enzyme C-term binding; This family consists of several scavenger mRNA...	cl00228	106.132	4.15E-29	58 - 166	specific	256766
HIT_like superfamily		HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x...	-	106.132	4.15E-29	58 - 166	superfamily	260280

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
7887	PHATRDRAFT_39403	PHATRDRAFT_39403	192582	300283	Not available	Cre03.g169200.t1.2	AT4G16566.1	506062

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments