3163 SET
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3163 chr_3 SET 287018 288999 + SET

Synonyms

NCBI ID Ensembl Genomes exon ID
7441733 Thaps3163.2, Thaps3163.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0361

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0109
 0.50

Most Highly Correlated Transcripts

2791

DUF1649 superfamily
0.8869

10581

Peptidase_C54 superfamily
0.8832

35323

RRM_SR140
0.8812

12836

EEP superfamily
0.8516

5185

RPN7 superfamily
0.848

1303

WD40 superfamily
0.8469

262616

(MYB22)
0.8468

22989

(Tp_Myb1R_SHAQKYF9a) MYB DNA binding protein/ transcription factor-like protein
0.8431

23101

hypothetical protein
0.8429

262956

WASH-7_mid
0.8428

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SET SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be... cl02566 68.2939 8.00E-14 292 - 419 specific 250181
SET superfamily SET domain; SET domains are protein lysine methyltransferase enzymes. SET domains appear to be... - 68.2939 8.00E-14 292 - 419 superfamily 261347

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49977 PHATRDRAFT_49977 227681 157424 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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