31822 WD40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31822 chr_2 WD40 1281906 1283255 + WD40

Synonyms

NCBI ID Ensembl Genomes exon ID
7450404 Thaps31822.1, Thaps31822.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0413

Most Highly Correlated Transcripts

11085

hypothetical protein
0.9377

13448

Sec1
0.9237

39741

(APM3) AP-3_Mu3_Cterm
0.9138

268084

SKIP_SNW
0.9105

24660

hypothetical protein
0.9098

28004

hypothetical protein
0.9078

36425

MORN superfamily
0.9073

6997

hypothetical protein
0.9071

2154

hypothetical protein
0.9061

39726

NrfG
0.9061

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 244.167 2.01E-77 87 - 387 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 244.167 2.01E-77 87 - 387 superfamily 238121
COG2319 FOG: WD40 repeat [General function prediction only] - 143.305 4.54E-38 83 - 387 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11593 PHATRDRAFT_11593 258986 235196 104329 Cre10.g446900.t1.2 AT4G15900.1 300138

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0003847 -

GO:0003847

1-alkyl-2-acetylglycerophosphocholine esterase activity

Details: 
Catalysis of the reaction: 2-acetyl-1-alkyl-sn-glycero-3-phosphocholine + H2O = 1-alkyl-sn-glycero-3-phosphocholine + acetate.
GO Category: 
MF

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