32176 GABARAP
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32176 chr_2 GABARAP 340556 341819 + GABARAP

Synonyms

NCBI ID Ensembl Genomes exon ID
7448632 Thaps32176.1, Thaps32176.3, Thaps32176.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0365

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0103
 0.42

Most Highly Correlated Transcripts

bd1840

(bd1840) NA
0.8724

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8631

20619

hypothetical protein
0.8554

bd643

(bd643) NA
0.8513

4315

(Tp_HSF_1.2b) HSF_DNA-bind
0.8443

268963

Pumilio
0.8386

24588

hypothetical protein
0.8352

28413

BglB superfamily
0.8348

bd1806

(bd1806) AAT_I superfamily
0.8314

bd1756

(bd1756) NA
0.8309

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GABARAP Ubiquitin domain of GABA-receptor-associated protein; GABARAP (GABA-receptor-associated protein)... cl00155 208.629 1.10E-68 107 - 217 specific 176355
UBQ superfamily Ubiquitin-like proteins; Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins.... - 208.629 1.10E-68 107 - 217 superfamily 260222

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
263721 PHATRDRAFT_50303 PHATRDRAFT_50303 267723 195579 439957 Cre16.g689650.t1.2 AT2G05630.1 353495

KEGG

KEGG description KEGG Pathway
Regulation of autophagy map04140

GO Terms

Not available -

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