3258 PSII_Pbs27
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3258 chr_3 PSII_Pbs27 524202 525196 + PSII_Pbs27

Synonyms

NCBI ID Ensembl Genomes exon ID
7441784 Thaps3258.1, Thaps3258.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0071

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0104
 0.31

Most Highly Correlated Transcripts

bd718

(bd718) PRK10387
0.9738

bd1306

(bd1306) NA
0.9692

bd1820

(bd1820) Fasciclin
0.9499

bd1645

(bd1645) tpt
0.9405

bd218

(bd218) Chloroa_b-bind superfamily
0.9363

bd1387

(bd1387) psbE
0.9356

bd1342

(bd1342) psaL
0.9336

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9296

bd1403

(bd1403) NA
0.924

40193

NA
0.9238

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PSII_Pbs27 Photosystem II Pbs27; This family of proteins contains Pbs27, a highly conserved component of... cl11841 120.434 3.98E-35 63 - 170 specific 205506
PSII_Pbs27 superfamily Photosystem II Pbs27; This family of proteins contains Pbs27, a highly conserved component of... - 120.434 3.98E-35 63 - 170 superfamily 245784

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9078 PHATRDRAFT_9078 212328 307568 451669 Cre05.g243800.t1.2 AT1G03600.1 Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

Not available -

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