32790 RRM_eIF3G_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32790 chr_3 RRM_eIF3G_like 404892 405266 + RRM_eIF3G_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7444020 Thaps32790.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0226
 0.29

Most Highly Correlated Transcripts

bd96

(bd96) eIF-3_zeta
0.9481

bd1709

(bd1709) NA
0.9306

bd1876

(bd1876) NatB_MDM20 superfamily
0.8965

40509

(RL30) Ribosomal_L24e_L24
0.8922

4372

hypothetical protein
0.8839

28755

NSA2
0.8813

33589

Brix superfamily
0.8761

32158

NOC3
0.874

9118

MoaC_PE
0.8739

23209

hypothetical protein
0.8735

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_eIF3G_like RNA recognition motif in eukaryotic translation initiation factor 3 subunit G (eIF-3G) and similar... cl17169 153.079 5.30E-49 4 - 80 specific 240854
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 153.079 5.30E-49 4 - 80 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 77.6798 2.60E-18 1 - 84 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16281 PHATRDRAFT_16281 172705 116927 443688 Cre06.g269450.t1.2 AT3G11400.1 559962

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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