32934 RhomboidThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
32934	chr_3	Rhomboid	1556624	1557772	-	Rhomboid

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449512	Thaps32934.1, Thaps32934.3, Thaps32934.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0109

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0082	0.46	0.039 1300

Most Highly Correlated Transcripts

261400 NA 0.8608	263656 hypothetical protein 0.8588	262567 Aldo_ket_red 0.8578	13448 Sec1 0.851	20795 SCP_euk 0.8493	38331 YIP1 superfamily 0.8454
264347 NDUFA9_like_SDR_a 0.8451	269655 PRK09330 0.8428	5456 hypothetical protein 0.8402	10460 hypothetical protein 0.8389

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Rhomboid		Rhomboid family; This family contains integral membrane proteins that are related to Drosophila...	cl11446	125.799	4.25E-35	33 - 168	specific	250801
Rhomboid superfamily		Rhomboid family; This family contains integral membrane proteins that are related to Drosophila...	-	125.799	4.25E-35	33 - 168	superfamily	264372

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Cre03.g145527.t1.1	AT2G29050.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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