33033 YSH1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33033 chr_3 YSH1 1353736 1356210 + YSH1

Synonyms

NCBI ID Ensembl Genomes exon ID
7451271 Thaps33033.3, Thaps33033.1, Thaps33033.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0320

Most Highly Correlated Transcripts

1778

hypothetical protein
0.8978

3719

DECH_helic
0.8892

6143

HSA
0.8879

262858

(IKI3) IKI3
0.8854

2666

hypothetical protein
0.8822

34505

hypothetical protein
0.8802

268194

(Tp_Myb4R1b) SANT
0.8794

262439

Bromodomain superfamily
0.8785

12441

HP_HAP_like
0.8779

21387

Peptidase_M48 superfamily
0.8756

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Beta-Casp Beta-Casp domain; The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA... cl12567 143.449 9.32E-40 254 - 377 specific 214983
Beta-Casp superfamily Beta-Casp domain; The beta-CASP domain is found C terminal to the beta-lactamase domain in pre-mRNA... - 143.449 9.32E-40 254 - 377 superfamily 264703
CPSF73-100_C superfamily Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term; This is the C-... - 84.278 2.43E-18 488 - 760 superfamily 264965
Lactamase_B Metallo-beta-lactamase superfamily; Apart from the beta-lactamases a number of other proteins... cl00446 71.4306 3.57E-14 19 - 185 specific 214854
Lactamase_B superfamily Metallo-beta-lactamase superfamily; Metallo-beta-lactamase superfamily. - 71.4306 3.57E-14 19 - 185 superfamily 260426
YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal... - 394.097 3.57E-129 5 - 467 multi-dom 224157

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_28482 PHATRDRAFT_28482 195229 236353 70636 Cre12.g498050.t1.2 AT1G61010.3 478942

KEGG

KEGG description KEGG Pathway
mRNA surveillance pathway map03015

GO Terms

Not available -

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