6143 HSA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6143 chr_6 HSA 819505 826848 - HSA

Synonyms

NCBI ID Ensembl Genomes exon ID
7443611 Thaps6143.2, Thaps6143.3, Thaps6143.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0479

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0003
 0.47

Most Highly Correlated Transcripts

8762

SNF2_N
0.9157

268194

(Tp_Myb4R1b) SANT
0.9108

24852

hypothetical protein
0.9089

23992

Rab3-GTPase_cat
0.9056

263599

COG3899
0.9044

24688

hypothetical protein
0.904

3934

COG2319
0.9031

4047

hypothetical protein
0.8997

263610

COG3899
0.8973

7121

DUF3684 superfamily
0.895

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSA HSA; This domain is predicted to bind DNA and is often found associated with helicases. cl02676 64.6317 4.73E-12 569 - 611 specific 254265
HSA superfamily HSA; This domain is predicted to bind DNA and is often found associated with helicases. - 64.6317 4.73E-12 569 - 611 superfamily 261403

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45934 PHATRDRAFT_45934 260735 186443 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005634 GO:0000810 GO:0004787 GO:0008722 GO:0008758 GO:0008796 GO:0008828 GO:0016462 GO:0016818 GO:0019176 GO:0019177 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0000810

diacylglycerol diphosphate phosphatase activity

Details: 
Catalysis of the reaction: a 1,2-diacyl-sn-glycerol 3-diphosphate + H2O = a 1,2-diacyl-sn-glycerol 3-phosphate + phosphate.
GO Category: 
MF

GO:0004787

thiamine-pyrophosphatase activity

Details: 
Catalysis of the reaction: TDP + H2O = TMP + phosphate.
GO Category: 
MF

GO:0008722

NA

Details: 
NA
GO Category: 
NA

GO:0008758

UDP-2,3-diacylglucosamine hydrolase activity

Details: 
Catalysis of the reaction: H2O + UDP-2,3-bis(3-hydroxymyristoyl)glucosamine = 2,3-bis(3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP.
GO Category: 
MF

GO:0008796

bis(5'-nucleosyl)-tetraphosphatase activity

Details: 
Catalysis of the hydrolysis of P(1),P(4)-bis(5'-nucleosyl)tetraphosphate into two nucleotides.
GO Category: 
MF

GO:0008828

dATP pyrophosphohydrolase activity

Details: 
Catalysis of the reaction: deoxy-ATP + H2O = dAMP + diphosphate.
GO Category: 
MF

GO:0016462

pyrophosphatase activity

Details: 
Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments.
GO Category: 
MF

GO:0016818

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Details: 
Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.
GO Category: 
MF

GO:0019176

dihydroneopterin monophosphate phosphatase activity

Details: 
Catalysis of the reaction: dihydroneopterin monophosphate = dihydroneopterin + phosphate.
GO Category: 
MF

GO:0019177

dihydroneopterin triphosphate pyrophosphohydrolase activity

Details: 
Catalysis of the reaction: dihydroneopterin triphosphate = dihydroneopterin phosphate + diphosphate.
GO Category: 
MF

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