33055 PLN02256Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
33055	chr_3	PLN02256	2348934	2349842	+	PLN02256

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443834	Thaps33055.2, Thaps33055.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0161

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0033	0.48	0.000000021 0.013

Most Highly Correlated Transcripts

5262 hypothetical protein 0.8846	27811 PRK07777 0.8822	10526 Glyco_tranf_GTA_type superfamily 0.8809	5217 hypothetical protein 0.8805	6481 hypothetical protein 0.8798	37118 FeThRed_B 0.8795
7588 hypothetical protein 0.8795	1137 hypothetical protein 0.8795	8562 hypothetical protein 0.8764	29139 Glycos_transf_1 superfamily 0.8752

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PLN02256 superfamily		arogenate dehydrogenase	-	413.29	1.39E-145	1 - 268	superfamily	215144
PLN02256 superfamily		arogenate dehydrogenase	-	413.29	1.39E-145	1 - 268	superfamily	215144
TyrA		Prephenate dehydrogenase [Amino acid transport and metabolism]	-	77.7548	3.04E-17	1 - 268	multi-dom	223364

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	160793	Not available	Not available	Cre06.g278350.t1.1	AT1G15710.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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