33600 PTZ00184Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
33600	chr_4	PTZ00184	1914792	1915307	+	PTZ00184

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443777	Thaps33600.2, Thaps33600.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0314

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0097	0.39	0.37 0.009

Most Highly Correlated Transcripts

262616 (MYB22) 0.8044	36597 trmE 0.7864	2047 hypothetical protein 0.7682	10533 hypothetical protein 0.7652	12259 COG1204 0.7642	36650 hypothetical protein 0.7553
264090 AAA_12 0.7533	21388 hypothetical protein 0.7497	4712 Enkurin 0.7419	24288 RtcB 0.7416

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
EFh superfamily		EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal...	-	60.6393	4.01E-13	11 - 71	superfamily	238008
EFh superfamily		EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal...	-	60.6393	4.01E-13	11 - 71	superfamily	238008
PTZ00184		calmodulin; Provisional	-	80.1906	1.45E-19	3 - 147	multi-dom	185504

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Cre01.g051250.t1.2	Not available	313210

KEGG

KEGG description	KEGG Pathway
Phosphatidylinositol signaling system	map04070

GO Terms

GO:0005509 -

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