24288 RtcB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
24288 chr_11a RtcB 115590 118007 + RtcB

Synonyms

NCBI ID Ensembl Genomes exon ID
7444526 Thaps24288.2, Thaps24288.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0222

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0147
 0.38

Most Highly Correlated Transcripts

bd1876

(bd1876) NatB_MDM20 superfamily
0.9235

261059

hypothetical protein
0.9109

262826

DUF3608 superfamily
0.9083

36273

Alpha_ANH_like_IV
0.9068

4959

hypothetical protein
0.9054

263786

(ZFP20) zf-TAZ
0.9035

24642

PLN02286
0.9002

5777

PRO8NT
0.8984

4866

PROCN
0.8973

2958

PROCN
0.8967

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RtcB Uncharacterized conserved protein [Function unknown] cl17455 320.068 8.19E-101 471 - 754 specific 224604
RtcB superfamily Uncharacterized conserved protein [Function unknown] - 320.068 8.19E-101 471 - 754 superfamily 266696
RtcB tRNA-splicing ligase RtcB; This family of RNA ligases (EC:6.5.1.3) join 2',3'-... - 348.821 5.85E-112 511 - 755 multi-dom 250393

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments