34348 SAM_decarbox superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34348 chr_5 SAM_decarbox superfamily 2201034 2202233 - SAM_decarbox superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7442307 Thaps34348.1, Thaps34348.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0083
 0.43

Most Highly Correlated Transcripts

31938

Pumilio
0.8921

13224

(pabA) PABP-1234
0.8412

bd763

(bd763) NA
0.8165

22826

hypothetical protein
0.8117

13884

Uup
0.807

bd1069

(bd1069) NA
0.7997

36407

PRK09427
0.7951

270286

hypothetical protein
0.7928

38073

NAP
0.7926

bd1133

(bd1133) ATM1
0.7878

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SAM_decarbox superfamily Adenosylmethionine decarboxylase; This is a family of S-adenosylmethionine decarboxylase (SAMDC)... - 397.841 1 - 263 superfamily 261659

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_3362 PHATRDRAFT_3362 274844 156563 72033 Cre03.g205900.t1.2 AT3G02470.4 308542

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0004014 GO:0006597 GO:0008295 -

GO:0004014

adenosylmethionine decarboxylase activity

Details: 
Catalysis of the reaction: S-adenosyl-L-methionine + H(+) = S-adenosylmethioninamine + CO(2).
GO Category: 
MF

GO:0006597

spermine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of spermine, a polybasic amine found in human sperm, in ribosomes and in some viruses and involved in nucleic acid packaging.
GO Category: 
BP

GO:0008295

spermidine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
GO Category: 
BP

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