31938 PumilioThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
31938	chr_2	Pumilio	166541	169179	+	Pumilio

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452172	Thaps31938.3, Thaps31938.2, Thaps31938.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0221

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0157	0.39	0.0000046 150

Most Highly Correlated Transcripts

34348 SAM_decarbox superfamily 0.8921	36609 PRK00142 0.8257	268688 hypothetical protein 0.8109	bd1945 (bd1945) NA 0.8095	36798 S_TKc 0.8086	12971 WD40 superfamily 0.8069
262091 eukaryotic translation initiation factor 3, subunit 10 0.8064	22826 hypothetical protein 0.8062	20580 hypothetical protein 0.8052	37786 SrmB 0.805

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Pumilio superfamily		Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain)...	-	314.53	8.92E-100	386 - 709	superfamily	153420
Pumilio superfamily		Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain)...	-	314.53	8.92E-100	386 - 709	superfamily	153420

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_9143	PHATRDRAFT_9143	269082	194376	429539	Cre12.g544700.t1.1	AT5G56510.1	545979

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003723 GO:0016071 -

Add comment

Log in to post comments