34442 CAP_ED
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34442 chr_5 CAP_ED 1591619 1594180 - CAP_ED

Synonyms

NCBI ID Ensembl Genomes exon ID
7445181 Thaps34442.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0258

Most Highly Correlated Transcripts

bd911

(bd911) GH18_chitinase-like superfamily
0.9683

33287

(UBA2) Ube1
0.9434

262797

Sec7
0.9171

9148

hypothetical protein
0.9022

7299

hypothetical protein
0.9015

bd909

(bd909) NA
0.8982

8797

hypothetical protein
0.897

37366

Peptidase_C19 superfamily
0.8929

14527

Sugar_tr
0.8925

13920

PAP_central
0.8921

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... cl00047 90.4629 3.96E-21 692 - 800 specific 237999
CAP_ED superfamily effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... - 90.4629 3.96E-21 692 - 800 superfamily 260155
CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... cl00047 90.4629 3.96E-21 692 - 800 specific 237999
CAP_ED superfamily effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... - 90.4629 3.96E-21 692 - 800 superfamily 260155
Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein... - 68.3195 5.53E-13 565 - 692 multi-dom 223736
Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein... - 68.3195 5.53E-13 565 - 692 multi-dom 223736

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005952 GO:0006468 GO:0008603 GO:0004672 GO:0004682 GO:0004691 GO:0005956 GO:0008605 -

GO:0005952

cAMP-dependent protein kinase complex

Details: 
An enzyme complex, composed of regulatory and catalytic subunits, that catalyzes protein phosphorylation. Inactive forms of the enzyme have two regulatory chains and two catalytic chains; activation by cAMP produces two active catalytic monomers and a regulatory dimer.
GO Category: 
CC

GO:0006468

protein phosphorylation

Details: 
The process of introducing a phosphate group on to a protein.
GO Category: 
BP

GO:0008603

cAMP-dependent protein kinase regulator activity

Details: 
Modulation of the activity of the enzyme cAMP-dependent protein kinase.
GO Category: 
MF

GO:0004672

protein kinase activity

Details: 
Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
GO Category: 
MF

GO:0004682

NA

Details: 
NA
GO Category: 
NA

GO:0004691

cAMP-dependent protein kinase activity

Details: 
Catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein. This reaction requires the presence of cAMP.
GO Category: 
MF

GO:0005956

protein kinase CK2 complex

Details: 
A protein complex that possesses protein serine/threonine kinase activity, and contains two catalytic alpha subunits and two regulatory beta subunits. Protein kinase CK2 complexes are found in nearly every subcellular compartment, and can phosphorylate many protein substrates in addition to casein.
GO Category: 
CC

GO:0008605

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments