34591 PRP38
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34591 chr_6 PRP38 347216 348391 - PRP38

Synonyms

NCBI ID Ensembl Genomes exon ID
7451139 Thaps34591.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0236

Most Highly Correlated Transcripts

plastid_psb28

0.8878

262616

(MYB22)
0.8877

12836

EEP superfamily
0.8743

9650

hypothetical protein
0.8665

13448

Sec1
0.8626

2598

FANCE_c-term
0.8623

20865

DUF1162 superfamily
0.8583

7146

hypothetical protein
0.8574

9462

hypothetical protein
0.8547

23270

hypothetical protein
0.8525

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRP38 superfamily PRP38 family; Members of this family are related to the pre mRNA splicing factor PRP38 from yeast.... - 249.013 2.92E-81 6 - 176 superfamily 251906
PRP38 superfamily PRP38 family; Members of this family are related to the pre mRNA splicing factor PRP38 from yeast.... - 249.013 2.92E-81 6 - 176 superfamily 251906

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd224 PHATRDRAFT_bd224 162445 156909 459474 Cre12.g503400.t1.2 AT2G40650.1 564683

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

Not available -

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