34900 PLN02658
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34900 chr_6 PLN02658 2005084 2006593 - PLN02658

Synonyms

NCBI ID Ensembl Genomes exon ID
7446371 Thaps34900.2, Thaps34900.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0424

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0243
 0.36

Most Highly Correlated Transcripts

bd410

(bd410) HNHc
0.9771

bd1941

(bd1941) NA
0.9685

bd415

(bd415) arom_aa_hydroxylase superfamily
0.9615

bd1841

(bd1841) CAP10 superfamily
0.951

bd1808

(bd1808) NA
0.8898

9173

hypothetical protein
0.886

9714

hypothetical protein
0.8859

32067

PTZ00182
0.8809

20984

hypothetical protein
0.8786

7752

hypothetical protein
0.8777

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN02658 homogentisate 1,2-dioxygenase cl17306 729.968 0 11 - 477 specific 215355
HgmA superfamily homogentisate 1,2-dioxygenase; Homogentisate dioxygenase cleaves the aromatic ring during the... - 729.968 0 11 - 477 superfamily 266617

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49112 PHATRDRAFT_49112 Not available Not available 457592 Cre02.g091200.t1.1 AT5G54080.2 350698

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0004411 GO:0006559 GO:0006570 -

GO:0004411

homogentisate 1,2-dioxygenase activity

Details: 
Catalysis of the reaction: homogentisate + O(2) = 4-maleylacetoacetate + H(+).
GO Category: 
MF

GO:0006559

L-phenylalanine catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid.
GO Category: 
BP

GO:0006570

tyrosine metabolic process

Details: 
The chemical reactions and pathways involving tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid.
GO Category: 
BP

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