35046 NADB_Rossmann superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35046 chr_6 NADB_Rossmann superfamily 661826 663436 + NADB_Rossmann superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448594 Thaps35046.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0154

Most Highly Correlated Transcripts

261400

NA
0.928

30701

PRK05279
0.917

261981

0.914

268904

hypothetical protein
0.9119

7012

hypothetical protein
0.9006

264674

2OG-FeII_Oxy_3 superfamily
0.8988

32468

STKc_CDC2L1
0.8985

16075

tpt
0.8919

34968

Glyco_hydro_47
0.8898

6708

Phosphonate-bd superfamily
0.8888

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NADB_Rossmann superfamily Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD... - 260.615 4.26E-82 185 - 526 superfamily 263925
WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate... - 179.753 1.51E-51 185 - 526 multi-dom 223528

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available 482943

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0009225 GO:0005975 GO:0016857 GO:0003978 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0009225

nucleotide-sugar metabolic process

Details: 
The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
GO Category: 
BP

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

GO:0016857

racemase and epimerase activity, acting on carbohydrates and derivatives

Details: 
Catalysis of a reaction that alters the configuration of one or more chiral centers in a carbohydrate molecule.
GO Category: 
MF

GO:0003978

UDP-glucose 4-epimerase activity

Details: 
Catalysis of the reaction: UDP-glucose = UDP-galactose.
GO Category: 
MF

Add comment

Log in to post comments