35464 Nth
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35464 chr_7 Nth 1293799 1295346 - Nth

Synonyms

NCBI ID Ensembl Genomes exon ID
7450665 Thaps35464.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0028

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0067
 0.47

Most Highly Correlated Transcripts

36037

Trypsin_2
0.9276

37934

GRX_PICOT_like
0.9183

268192

Zip superfamily
0.9083

9776

hypothetical protein
0.8987

16075

tpt
0.8954

268343

NA
0.8917

261882

Thioredoxin_like superfamily
0.8899

31751

PKCI_related
0.8891

26991

GRX_GRXh_1_2_like
0.889

1773

hypothetical protein
0.8877

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase... cl19066 121.195 1.96E-32 307 - 461 specific 238013
ENDO3c superfamily endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase... - 121.195 1.96E-32 307 - 461 superfamily 267419
Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] - 185.849 3.46E-55 292 - 464 multi-dom 223255

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
4891 PHATRDRAFT_12645 PHATRDRAFT_12645 165805 97635 466941 Cre17.g732050.t1.2 AT2G31450.2 478985

KEGG

KEGG description KEGG Pathway
Base excision repair map03410

GO Terms

GO:0003677 GO:0006284 GO:0003906 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006284

base-excision repair

Details: 
In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
GO Category: 
BP

GO:0003906

DNA-(apurinic or apyrimidinic site) lyase activity

Details: 
Catalysis of the cleavage of the C-O-P bond 3' to the apurinic or apyrimidinic site in DNA by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate.
GO Category: 
MF

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