36407 PRK09427
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36407 chr_10 PRK09427 754111 755985 - PRK09427

Synonyms

NCBI ID Ensembl Genomes exon ID
7446884 Thaps36407.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0050

Most Highly Correlated Transcripts

19913

ybbN
0.8875

261180

LRR_RI superfamily
0.8827

14527

Sugar_tr
0.8646

24313

hypothetical protein
0.8636

264081

YSH1
0.8596

1255

Nic96 superfamily
0.8518

268458

ATPase-IIA1_Ca
0.8494

37336

Beach
0.8464

269843

(ZFP12) hypothetical protein
0.8455

26403

PLN03233
0.8445

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway,... cl17186 258.548 1.08E-81 99 - 341 specific 238203
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 205.886 5.13E-62 366 - 610 superfamily 266538
PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan... cl17186 205.886 5.13E-62 366 - 610 specific 238237
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 205.886 5.13E-62 366 - 610 superfamily 266538
PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional - 277.466 8.59E-86 88 - 609 multi-dom 236509

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004425 GO:0006568 -

GO:0004425

indole-3-glycerol-phosphate synthase activity

Details: 
Catalysis of the reaction: 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate = 1-(indol-3-yl)glycerol 3-phosphate + CO2 + H2O.
GO Category: 
MF

GO:0006568

tryptophan metabolic process

Details: 
The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.
GO Category: 
BP

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