36553 RJL
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36553 chr_10 RJL 492590 493231 + RJL

Synonyms

NCBI ID Ensembl Genomes exon ID
7445880 Thaps36553.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0451

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0036
 0.41

Most Highly Correlated Transcripts

bd1948

(bd1948) NA
0.8714

261002

WD40 superfamily
0.8661

24525

hypothetical protein
0.8615

262923

Peptidase_M8 superfamily
0.8555

37497

cysE
0.8524

11563

hypothetical protein
0.8444

39726

NrfG
0.8424

30701

PRK05279
0.8416

38011

PKc_like superfamily
0.8407

10929

NYD-SP28
0.8389

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RJL Rab GTPase family J-like (RabJ-like); RJLs are found in many protists and as chimeras with C-... cl17170 248.81 6.77E-84 39 - 208 specific 133319
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 248.81 6.77E-84 39 - 208 superfamily 266525

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre02.g144350.t1.2 Not available 314966

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0007264 GO:0015031 GO:0003924 GO:0003925 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0007264

small GTPase mediated signal transduction

Details: 
Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
GO Category: 
BP

GO:0015031

protein transport

Details: 
The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0003925

NA

Details: 
NA
GO Category: 
NA

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