36576 TypA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36576 chr_11a TypA 144190 146321 - TypA

Synonyms

NCBI ID Ensembl Genomes exon ID
7443258 Thaps36576.4, Thaps36576.1, Thaps36576.2, Thaps36576.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0042

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0088
 0.37

Most Highly Correlated Transcripts

33044

PLN02502
0.8979

22725

hypothetical protein
0.8708

22200

hypothetical protein
0.8579

22879

hypothetical protein
0.8544

26492

PRK05385
0.8232

29049

IF-2
0.8216

4138

hypothetical protein
0.821

2611

hypothetical protein
0.8145

39286

Uup
0.814

511

(GBP1) PRK09601
0.8136

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TypA_BipA Tyrosine phosphorylated protein A (TypA)/BipA family belongs to ribosome-binding GTPases; BipA is a... cl17170 331.095 4.93E-110 1 - 194 specific 206678
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 331.095 4.93E-110 1 - 194 superfamily 266525
BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation... cl02787 106.028 2.36E-27 204 - 287 specific 239662
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 106.028 2.36E-27 204 - 287 superfamily 261449
BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the... cl02785 104.509 6.46E-27 404 - 481 specific 239681
Elongation_Factor_C superfamily Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation... - 104.509 6.46E-27 404 - 481 superfamily 261447
TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] - 826.105 0 1 - 609 multi-dom 224138

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_23444 PHATRDRAFT_23444 245528 213345 453823 Cre07.g335200.t1.1 AT5G13650.2 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0006412 GO:0003924 GO:0008547 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments