29049 IF-2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
29049 chr_7 IF-2 1869279 1871619 - IF-2

Synonyms

NCBI ID Ensembl Genomes exon ID
7447208 Thaps29049.3, Thaps29049.1, Thaps29049.4, Thaps29049.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0041

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0236
 0.32

Most Highly Correlated Transcripts

bd1652

(bd1652) ABC_ATPase superfamily
0.9442

6610

hypothetical protein
0.9364

bd258

(bd258) HU
0.9349

33044

PLN02502
0.8982

ThpsCp134

(rpl34) ribosomal protein L34
0.8879

40034

thrS
0.8833

bd208

(bd208) DUF3529
0.8828

bd1403

(bd1403) NA
0.8827

bd1380

(bd1380) ycf39
0.8816

bd997

(bd997) rpoC1
0.8805

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
IF2_eIF5B Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family; IF2/eIF5B contribute to... cl17170 247.385 2.16E-78 91 - 254 specific 206674
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 247.385 2.16E-78 91 - 254 superfamily 266525
IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic... cl02787 126.06 1.35E-34 264 - 359 specific 239673
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 101.794 6.02E-26 503 - 585 superfamily 261449
mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation... cl02787 101.794 6.02E-26 503 - 585 specific 239663
Translation_Factor_II_like superfamily Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor... - 101.794 6.02E-26 503 - 585 superfamily 261449
IF-2 superfamily Translation-initiation factor 2; IF-2 is a translation initiator in each of the three main... - 92.8951 2.23E-22 384 - 486 superfamily 256778
IF-2 superfamily Translation-initiation factor 2; IF-2 is a translation initiator in each of the three main... - 92.8951 2.23E-22 384 - 486 superfamily 256778
IF-2 translation initiation factor IF-2; This model discriminates eubacterial (and mitochondrial)... - 560.538 0 1 - 590 multi-dom 232995

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_10835 PHATRDRAFT_10835 266952 294531 419681 Cre07.g341850.t1.2 AT1G17220.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003743 GO:0005525 GO:0006413 GO:0006412 GO:0003924 GO:0008547 -

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0006413

translational initiation

Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO Category: 
BP

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0003924

GTPase activity

Details: 
Catalysis of the reaction: GTP + H2O = GDP + phosphate.
GO Category: 
MF

GO:0008547

NA

Details: 
NA
GO Category: 
NA

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