39286 Uup
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39286 chr_1 Uup 2633767 2636338 + Uup

Synonyms

NCBI ID Ensembl Genomes exon ID
7445010 Thaps39286.1, Thaps39286.4, Thaps39286.3, Thaps39286.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0219

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0192
 0.36

Most Highly Correlated Transcripts

22200

hypothetical protein
0.8913

27873

PLN02274
0.8905

32395

RNA_pol
0.8903

32807

DEADc
0.8794

39953

SrmB
0.8791

32325

ABC_ATPase superfamily
0.8733

18198

RRM_NIFK_like
0.8731

23718

hypothetical protein
0.8667

28300

dimethyladenosine transferase
0.8628

32414

PRK00093
0.8627

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 122.172 3.31E-32 151 - 374 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 122.172 3.31E-32 151 - 374 superfamily 266551
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 122.172 3.31E-32 151 - 374 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 122.172 3.31E-32 151 - 374 superfamily 266551
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 77.6175 3.56E-17 373 - 442 superfamily 257346
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 77.6175 3.56E-17 373 - 442 superfamily 257346
Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction... - 486.758 1.30E-164 149 - 678 multi-dom 223562

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 175273 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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