36640 DEXDcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
36640	chr_11a	DEXDc	575529	579080	-	DEXDc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448347	Thaps36640.4, Thaps36640.3, Thaps36640.1, Thaps36640.2, Thaps36640.5

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0350

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0001	0.47	10000 120

Most Highly Correlated Transcripts

268454 CAP_ED 0.9335	33225 MYSc 0.9283	11921 hypothetical protein 0.9281	263786 (ZFP20) zf-TAZ 0.9261	261059 hypothetical protein 0.9232	2958 PROCN 0.9229
4866 PROCN 0.921	2065 hypothetical protein 0.9195	263947 SNF2_N 0.9192	263859 GH18_chitinase-like superfamily 0.9191

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DEXDc		DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA...	cl17251	106.268	4.01E-26	841 - 980	specific	238005
DEXDc superfamily		DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA...	-	106.268	4.01E-26	841 - 980	superfamily	266587
DEXDc		DEAD-like helicases superfamily; DEAD-like helicases superfamily.	-	116.437	4.58E-29	813 - 1010	multi-dom	214692

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_4016	PHATRDRAFT_4016	182073	191672	415931	Cre14.g618860.t1.1	AT3G12810.1	483737

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003677 GO:0005524 GO:0008026 -

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