268454 CAP_ED
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268454 chr_3 CAP_ED 699846 704290 - CAP_ED

Synonyms

NCBI ID Ensembl Genomes exon ID
7444728 Thaps268454.2, Thaps268454.4, Thaps268454.1, Thaps268454.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0350

Most Highly Correlated Transcripts

263859

GH18_chitinase-like superfamily
0.9483

12602

MYSc
0.9415

263191

PLN03076
0.9413

2958

PROCN
0.9413

263947

SNF2_N
0.9384

5321

CobN-Mg_chel superfamily
0.938

33984

PKc_like superfamily
0.9358

262607

WD40 superfamily
0.935

262171

CAP_ED
0.9345

2065

hypothetical protein
0.9344

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... cl00047 63.499 6.93E-12 370 - 476 specific 237999
CAP_ED superfamily effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... - 63.499 6.93E-12 370 - 476 superfamily 260155

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005267 GO:0006813 GO:0016020 GO:0005261 GO:0006812 GO:0005216 GO:0006811 -

GO:0005267

potassium channel activity

Details: 
Catalysis of facilitated diffusion of a potassium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
GO Category: 
MF

GO:0006813

potassium ion transport

Details: 
The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0005261

cation channel activity

Details: 
Catalysis of the energy-independent passage of cations across a lipid bilayer down a concentration gradient.
GO Category: 
MF

GO:0006812

cation transport

Details: 
The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0005216

ion channel activity

Details: 
Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
GO Category: 
MF

GO:0006811

ion transport

Details: 
The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

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