36929 PCBP_like_KH
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36929 chr_12 PCBP_like_KH 900224 901643 - PCBP_like_KH

Synonyms

NCBI ID Ensembl Genomes exon ID
7443189 Thaps36929.3, Thaps36929.1, Thaps36929.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0060

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0090
 0.39

Most Highly Correlated Transcripts

bd1192

(bd1192) Acyl_ACP_Desat
0.9107

bd1658

(bd1658) NA
0.8945

270253

(NTT8) hypothetical protein
0.8439

bd1563

(bd1563) atpB
0.8165

23291

hypothetical protein
0.8165

bd1778

(bd1778) COG2329
0.8163

bd1387

(bd1387) psbE
0.8153

bd1645

(bd1645) tpt
0.8133

bd1342

(bd1342) psaL
0.8064

bd467

(bd467) Cytochrome_b_N
0.8056

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PCBP_like_KH K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem... cl17245 62.4939 5.34E-13 89 - 172 specific 239089
KH-I superfamily K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide... - 58.3403 1.96E-11 218 - 284 superfamily 266583
PCBP_like_KH K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem... cl17245 62.4939 5.34E-13 89 - 172 specific 239089
KH-I superfamily K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide... - 58.3403 1.96E-11 218 - 284 superfamily 266583
KH-I K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide... cl17245 58.3403 1.96E-11 218 - 284 specific 238053
KH-I superfamily K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide... - 58.3403 1.96E-11 218 - 284 superfamily 266583

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_40453 PHATRDRAFT_40453 183160 327650 Not available Cre16.g672750.t1.2 AT5G04430.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

Add comment

Log in to post comments