36986 EMG1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36986 chr_12 EMG1 451249 452113 - EMG1

Synonyms

NCBI ID Ensembl Genomes exon ID
7447535 Thaps36986.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0271

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0199
 0.24

Most Highly Correlated Transcripts

bd1807

(bd1807) RRS1 superfamily
0.9621

261145

Lactamase_B superfamily
0.927

42594

Ribosomal_P0_like
0.9178

268145

PLN00040
0.9172

31047

Brix
0.9091

23336

SRP40_C superfamily
0.9082

24849

(Tp_CCCH8) DnaQ_like_exo superfamily
0.9034

268598

COG1094
0.9034

24016

Ebp2 superfamily
0.903

32158

NOC3
0.8993

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EMG1 EMG1/NEP1 methyltransferase; Members of this family are essential for 40S ribosomal biogenesis. The... cl00764 232.069 1.03E-75 75 - 281 specific 252043
EMG1 superfamily EMG1/NEP1 methyltransferase; Members of this family are essential for 40S ribosomal biogenesis. The... - 232.069 1.03E-75 75 - 281 superfamily 260609

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11653 PHATRDRAFT_11653 161986 319796 67063 Cre01.g009950.t1.2 AT3G57000.1 506510

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0005634 GO:0007046 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0007046

NA

Details: 
NA
GO Category: 
NA

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