37100 Zn-ribbon_RPC11
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37100 chr_13 Zn-ribbon_RPC11 158490 158832 - Zn-ribbon_RPC11

Synonyms

NCBI ID Ensembl Genomes exon ID
7452978 Thaps37100.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0320

Most Highly Correlated Transcripts

268443

SAICAR_synt_Sc
0.9484

33995

DUF1077
0.9304

36476

WD40 superfamily
0.9299

24051

hypothetical protein
0.9274

36884

RimI
0.9226

24619

2-Hacid_dh_1
0.9176

268574

Tim17
0.9153

268144

OTU
0.9109

39232

PP2Cc
0.9105

268859

(GGTB1) PLN03201
0.9101

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Zn-ribbon_RPC11 C-terminal zinc ribbon domain of RPC11 subunit of RNA polymerase III; The C-terminal zinc ribbon... cl02609 93.0338 4.78E-26 67 - 112 specific 259794
Zn-ribbon superfamily C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit; The... - 93.0338 4.78E-26 67 - 112 superfamily 261369
RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription] - 84.8151 3.75E-22 1 - 112 multi-dom 224510

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_13326 PHATRDRAFT_13326 187317 305657 63678 Cre02.g102400.t1.2 AT4G07950.1 491179

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003677 GO:0003700 GO:0006354 GO:0006355 GO:0003899 GO:0003900 GO:0003901 GO:0003902 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0006354

DNA-templated transcription, elongation

Details: 
The extension of an RNA molecule after transcription initiation and promoter clearance at a DNA-dependent RNA polymerase promoter by the addition of ribonucleotides catalyzed by an RNA polymerase.
GO Category: 
BP

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

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