38022 PLN02873
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38022 chr_17 PLN02873 227858 229174 + PLN02873

Synonyms

NCBI ID Ensembl Genomes exon ID
7444192 Thaps38022.1, Thaps38022.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0017

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0142
 0.24

Most Highly Correlated Transcripts

bd718

(bd718) PRK10387
0.956

bd1306

(bd1306) NA
0.9517

bd1645

(bd1645) tpt
0.9443

bd760

(bd760) ZnMc superfamily
0.9401

22076

violaxanthin de-epoxidase-like 1
0.9326

5077

PLN00015
0.9244

261608

PLN02585
0.9236

bd218

(bd218) Chloroa_b-bind superfamily
0.921

bd1161

(bd1161) NA
0.9205

bd1474

(bd1474) phytoene_desat
0.9194

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN02873 coproporphyrinogen-III oxidase cl19362 445.616 1.50E-156 122 - 408 specific 215471
Coprogen_oxidas superfamily Coproporphyrinogen III oxidase; Coproporphyrinogen III oxidase. - 445.616 1.50E-156 122 - 408 superfamily 267715

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12186 PHATRDRAFT_12186 160409 320634 61042 Cre02.g092600.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004109 GO:0006779 -

GO:0004109

coproporphyrinogen oxidase activity

Details: 
Catalysis of the reaction: coproporphyrinogen III + 2 H(+) + O(2) = 2 CO(2) + 2 H(2)O + protoporphyrinogen IX.
GO Category: 
MF

GO:0006779

porphyrin-containing compound biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
GO Category: 
BP

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