38025 Pep_deformylase
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38025 chr_18 Pep_deformylase 358969 359928 - Pep_deformylase

Synonyms

NCBI ID Ensembl Genomes exon ID
7444266 Thaps38025.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0288

Most Highly Correlated Transcripts

268443

SAICAR_synt_Sc
0.858

264556

FBPase
0.8558

bd258

(bd258) HU
0.8522

bd463

(bd463) Aa_trans superfamily
0.8422

23762

CAF1 superfamily
0.8384

bd1652

(bd1652) ABC_ATPase superfamily
0.8373

6028

NA
0.8351

6953

PRK11713
0.8349

2890

hypothetical protein
0.8338

bd1893

(bd1893) NA
0.8314

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Pep_deformylase Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-... cl00234 166.122 1.84E-50 50 - 190 specific 238271
Pep_deformylase superfamily Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-... - 166.122 1.84E-50 50 - 190 superfamily 260286

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available 559382

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005506 GO:0006412 GO:0042586 GO:0008463 -

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

GO:0042586

peptide deformylase activity

Details: 
Catalysis of the reaction: formyl-L-methionyl peptide + H2O = formate + methionyl peptide.
GO Category: 
MF

GO:0008463

formylmethionine deformylase activity

Details: 
Catalysis of the reaction: N-formyl-L-methionine + H(2)O = L-methionine + formate.
GO Category: 
MF

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