38121 (clpA) ClpB_D2-small
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38121 chr_18 (clpA) ClpB_D2-small 116277 119074 - ClpB_D2-small

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0213

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0178
 0.28

Most Highly Correlated Transcripts

11165

hypothetical protein
0.8953

9388

hypothetical protein
0.886

10055

hypothetical protein
0.8827

5902

hypothetical protein
0.8819

33685

(MCM1) PRK09426
0.8773

8303

Glyco_trans_1_2
0.8644

263810

PTZ00430
0.8616

3694

hypothetical protein
0.858

8353

hypothetical protein
0.8575

10628

hypothetical protein
0.8568

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 73.3343 4.92E-15 420 - 568 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 73.3343 4.92E-15 420 - 568 superfamily 267297
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 73.3343 4.92E-15 420 - 568 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 73.3343 4.92E-15 420 - 568 superfamily 267297
ClpB_D2-small C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein,... cl11083 90.5329 1.29E-21 617 - 698 specific 255983
ClpB_D2-small superfamily C-terminal, D2-small domain, of ClpB protein; This is the C-terminal domain of ClpB protein,... - 90.5329 1.29E-21 617 - 698 superfamily 264218
AAA ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety... - 62.0057 2.94E-11 448 - 577 multi-dom 214640

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51134 PHATRDRAFT_51134 193566 318361 Not available Cre02.g090850.t1.1 AT1G74310.1 346539

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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