38231 (PETC2) PRK13474
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
38231 chr_19a_19 (PETC2) PRK13474 185372 186110 - PRK13474

Synonyms

NCBI ID Ensembl Genomes exon ID
7449890 Thaps38231.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0318

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0030
 0.47

Most Highly Correlated Transcripts

bd524

(bd524) NA
0.8471

bd196

(bd196) Snf7 superfamily
0.838

bd381

(bd381) NA
0.8223

36597

trmE
0.799

36650

hypothetical protein
0.7933

10533

hypothetical protein
0.7895

37374

PseudoU_synth superfamily
0.7889

32395

RNA_pol
0.7775

36183

(GPA1) G-alpha
0.7714

bd1807

(bd1807) RRS1 superfamily
0.7625

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is... cl00938 239.189 3.73E-80 119 - 245 specific 239553
Rieske superfamily Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (... - 239.189 3.73E-80 119 - 245 superfamily 260709
PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional - 271.525 4.80E-92 77 - 245 multi-dom 237392

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0006118 GO:0008121 GO:0016020 GO:0045285 GO:0016491 GO:0009496 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0008121

ubiquinol-cytochrome-c reductase activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: CoQH2 + 2 ferricytochrome c = CoQ + 2 ferrocytochrome c + 2 H+.
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0045285

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0009496

plastoquinol--plastocyanin reductase activity

Details: 
Catalysis of the reaction: 2 H(+)[side 1] + 2 oxidized plastocyanin + plastoquinol-1 = 2 H(+)[side 2] + 2 reduced plastocyanin + plastoquinone. This reaction involves the concomitant transfer of 2 H+ ions across a membrane.
GO Category: 
MF

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