39698 Zn-ribbon_RPA12
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39698 chr_2 Zn-ribbon_RPA12 2171768 2172585 + Zn-ribbon_RPA12

Synonyms

NCBI ID Ensembl Genomes exon ID
7450429 Thaps39698.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0228

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0259
 0.35

Most Highly Correlated Transcripts

23403

ANK
0.8781

22261

hypothetical protein
0.8773

4372

hypothetical protein
0.8677

269925

AAA_12 superfamily
0.8653

39946

(AMS2) PTZ00104
0.8575

7569

hypothetical protein
0.8562

7271

hypothetical protein
0.8499

23527

hypothetical protein
0.8494

269710

NADB_Rossmann superfamily
0.849

38472

HA2
0.8489

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Zn-ribbon_RPA12 C-terminal zinc ribbon domain of RPA12 subunit of RNA polymerase I; The C-terminal zinc ribbon... cl02609 90.34 3.37E-24 127 - 173 specific 259792
Zn-ribbon superfamily C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit; The... - 90.34 3.37E-24 127 - 173 superfamily 261369
RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription] - 71.3331 2.06E-16 60 - 173 multi-dom 224510

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_10310 PHATR_10310 189479 202037 64437 Cre01.g018000.t1.1 Not available 487107

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003677 GO:0003700 GO:0006354 GO:0006355 GO:0003899 GO:0003900 GO:0003901 GO:0003902 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0006354

DNA-templated transcription, elongation

Details: 
The extension of an RNA molecule after transcription initiation and promoter clearance at a DNA-dependent RNA polymerase promoter by the addition of ribonucleotides catalyzed by an RNA polymerase.
GO Category: 
BP

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

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