39913 (COP6) Coatomer_E
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
39913 chr_3 (COP6) Coatomer_E 1113276 1114390 - Coatomer_E
NCBI ID Ensembl Genomes exon ID
7448780 Thaps39913.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0431
Normalized Mean Residue
Thaps_bicluster_0054
0.44
Tim17
0.8718
hypothetical protein
0.8536
Trypsin_2
0.8524
F1-ATPase_delta
0.8479
NDUFA12 superfamily
0.8455
hypothetical protein
0.8444
0.8431
GRX_PICOT_like
0.8415
PRX5_like
0.8403
PLN02512
0.8397
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Coatomer_E Coatomer epsilon subunit; This family represents the epsilon subunit of the coatomer complex, which... - 205.021 7.76E-64 5 - 299 multi-dom 252768
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_19093 PHATRDRAFT_19093 171860 299832 440275 Cre13.g592450.t1.2 AT1G30630.1 330099
KEGG description KEGG Pathway
Not available Not available
GO:0003735 GO:0005622 GO:0005840 GO:0006412 GO:0005737 GO:0006886 GO:0008565 GO:0016020 -

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

protein transporter activity

Details: 
Enables the directed movement of proteins into, out of or within a cell, or between cells.
GO Category: 
MF

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC
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