40529 COG2319Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
40529	chr_4	COG2319	2233757	2236698	-	COG2319

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451401	Thaps40529.1, Thaps40529.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0220

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0278	0.24	66 20

Most Highly Correlated Transcripts

37748 SpoVK 0.9507	40884 (RPA1) RNAP_I_RPA1_N 0.9376	40871 COG1444 0.9329	268812 HrpA 0.9318	268735 (GPB1) WD40 0.9305	21222 SrmB 0.9293
21173 hypothetical protein 0.9285	25129 hypothetical protein 0.9279	268130 hypothetical protein 0.9274	264632 COG0826 0.9224

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	64.6636	9.40E-12	194 - 448	superfamily	238121
COG2319		FOG: WD40 repeat [General function prediction only]	-	75.5103	8.12E-15	132 - 514	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	97437	Cre12.g506000.t1.2	Not available	490395

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0008567 -

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