268812 HrpA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268812 chr_5 HrpA 114577 117443 + HrpA

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0234
 0.27

Most Highly Correlated Transcripts

32395

RNA_pol
0.9639

40529

COG2319
0.9318

25436

hypothetical protein
0.9295

21222

SrmB
0.9194

22840

hypothetical protein
0.9132

24015

Urb2 superfamily
0.9129

268735

(GPB1) WD40
0.9091

262041

MIF4G
0.9085

264632

COG0826
0.9083

24878

COG0412
0.9074

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 96.2524 7.16E-23 25 - 167 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 96.2524 7.16E-23 25 - 167 superfamily 266587
HA2 Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... cl04503 90.3542 1.88E-21 455 - 560 specific 252575
HA2 superfamily Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... - 90.3542 1.88E-21 455 - 560 superfamily 262181
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 76.953 1.34E-16 599 - 718 superfamily 254381
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 76.953 1.34E-16 599 - 718 superfamily 254381
HrpA HrpA-like helicases [DNA replication, recombination, and repair] - 524.191 1.51E-173 1 - 750 multi-dom 224557

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 187472 223185 416776 Cre03.g171650.t1.2 AT2G35920.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0008026 GO:0003676 GO:0004386 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008026

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004386

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

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