41392 (SIT2) Silic_transp superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
41392	chr_7	(SIT2) Silic_transp superfamily	1459434	1461210	+	Silic_transp superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447140	Thaps41392.1, Thaps41392.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0376

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0135	0.41	0.085 580

Most Highly Correlated Transcripts

268895 (SIT1) Silic_transp superfamily 0.8593	3863 DadA 0.8175	264395 PI3Kc_like superfamily 0.7933	21292 ArsB_NhaD_permease superfamily 0.7889	21968 hypothetical protein 0.7861	1945 hypothetical protein 0.7501
3706 hypothetical protein 0.7407	20671 hypothetical protein 0.7274	21776 hypothetical protein 0.727	10533 hypothetical protein 0.7112

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Silic_transp superfamily		Silicon transporter; Silicon transporter.	-	834.507	0	1 - 475	superfamily	146463

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_48707	PHATRDRAFT_48707	263777	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments